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RobEdwards
Australia
Приєднався 20 жов 2012
ASM 2021 Phage and IBD
Dr. Rob Edwards from Flinders University discusses the expansion of phage that occurs during irritable bowel disease. We don't know why (yet) this happens.
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Відео
ABACBS Presentation 2020
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Dr. Rob Edwards from Flinders University talks about his phage bioinformatics approaches at the 2020 Australian Bioinformatics and Computational Biology Virtual Conference
Why does paired end sequencing help assembly?
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Dr. Rob Edwards from San Diego State University wonders why paired-end sequencing helps with DNA sequence assembly.
illumina paired end sequencing
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Dr. Rob Edwards from San Diego State University describes how Illumina paired-end sequencing works.
Sanger sequencing
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Dr. Rob Edwards from San Diego State University describes Sanger sequencing - the original and the best!
Pacific Biosciences Sequencing
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Dr. Rob Edwards from San Diego State University describes Pacific Biosciences SMRT single-molecule long read sequencing.
Oxford Nanopore ONT Sequencing
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Dr. Rob Edwards from San Diego State University describes Oxford Nanopore MinION sequencing
454 pyrosequencing
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Dr. Rob Edwards from San Diego State University philosophizes on 454 DNA sequencing.
What does it mean to sequence a genome?
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Dr. Rob Edwards from San Diego State University wonders what it means to sequence a genome! For an overview of genome sequencing, see the course manual: linsalrob.github.io/ComputationalGenomicsManual/GenomeSequencingOverview/
Introduction to Illumina Sequencing
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Dr. Rob Edwards from San Diego State University introduces Illumina DNA sequencing. For an overview of genome sequencing, see the course manual: linsalrob.github.io/ComputationalGenomicsManual/GenomeSequencingOverview/
Ion Torrent Sequencing
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Dr. Rob Edwards from San Diego State University outlines Ion Torrent Sequencing. For an overview of genome sequencing, see the course manual: linsalrob.github.io/ComputationalGenomicsManual/GenomeSequencingOverview/
Genome Peek
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Dr. Rob Edwards from San Diego State University introduces Genome Peek, a quick way to look at contamination in genomes and to see the composition of metagenomes. Check out the paper at PeerJ: peerj.com/articles/1025/ and the website at edwards.sdsu.edu/GenomePeek/
Introduction to k-mers
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Dr. Rob Edwards from San Diego State University gives an introduction to nucleotide and amino acid k-mers
Introduction on counting k-mers
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Dr. Rob Edwards from San Diego State University provides an introduction on counting k-mers in DNA and protein sequences
Counting k-mers with Bloom filters
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Dr. Rob Edwards from San Diego State University describes how we can use the Bloom filter to efficiently weed out k-mers that appear only once.
Loved the part of blinking lights. Me gusto mucho xD
No need for Putty in Windows, you can "Add / Remove Features" from Settings / Control Panel and add OpenSSH (11MB), then you can access all ssh commands from terminal.
Thank you for another incredible video!😊❤
Thank you, perl is so good, that help me so much! 😊
Thanks for this video. It is really great.
Nice Video!
Still don't know why it's helpful. Thanks anyway
Thank you! I am ADHDer trying to understand all this for my masters in data science and your videos most helpful. Subscribed
2:48 isnt GGTTA the overlap of the sequence?
Great explanation
Very clear so far 👍🏻
How are a bunch of students of a somewhat difficult engineering major freaking out about a mirrored video in the comments
Thanks you sir😊
thank youuuuuuuuuuuuuuuuuu
Nice
My professor: *copies and pastes mathmatical proofs onto powerpoint slide* Dr. Edwards: *actually thinks about how to explain the subject-matter to others*
7:00 150bp from both end will have 100 bp overlap on 200bp . Like total length 12 bp has 6/6 no overlap ,but 12 shorten to 8bp will have 4 overlap of 6/6 both end read
I’m a little bit lost in my analysis: - I am expecting a 70bp amplicon at the end. - When I look at the size of my reads 1 and 2 before reassembling, I have 12 to 131 bp for R1, and 21 to 148 bp for R2. - How, with these highly distributed read lengths, am I supposed to choose the size for reassembling?
What's that you're writing on? Really great to learn
Im in love with you
arigato
Ok but, why? Why the size like a prime number? How does it guarantee less collisions? How it works compare with even size
Easy way to remember omega means slower algo is imagine the symbol is a long worm that has to slowly coil upwards to move- where as O is like sonic speeding in a ball
Čau dědo, miluju tvojí torbu <3
Its called quick sort but its not the quickest
you made this incredibly simple! thank you!!
Your hard work continues to pay off. Thank you for your generosity!
I am not exaggerating when I say that the THUMBNAIL of this video explained this concept more accurately than a 50-minute lecture from my university professor.
thanks
Thank u for ur great explanation, got it from the very first time
That means encryption done with public key can only be decrypted using equivalent private key.Right?
Thank you! Very well explained and easy to understand! 💛
Very informative lecture. Thanks
THIS IS WRONG
thats impressive you are writing with left hand towards left to make us see numbers on the glass from our side. Thats pretty cool & true skill !
I'm in a rush trying to prepare form my algorithm's exam in just 9 days and this explanation was just what I needed to understand HeapSort. Thank you so much!!
I got it! The real trick happens during blackouts
You can write letter reversely?! Awesome
SUPER HELPFUL!!! THANK YOU SO MUCH
Wonderful explaination. Pls answer this query if possible related to this topic.. We download the 'private key' over the internet from AWS. Dsnt it makes the private key insecure as it was not on our laptop in the 1st place !!?? And got downloaded from AWS externally.
I study Biotechnology in Universidad de Salamanca, and this was very useful, thank you so much.
I actually had a good CS 101 professor -- don't want to trash talk him in absentia -- but this is still easier to understand than the way he explained classes and inheritance. Thank you!
Great Video, brilliant explanation.Thank you
I love your videos professor. Hope I can attend your class in person someday :)
char's corresponding object version is Character, and float's object version is Float.
thank you so much for this valuable video
Could you please explain why it has a score of L-L = 4?
great class sir life saver
to check the balance dont you have to check the heights of the subtrees? this guy is checking the height of the root node itself...
really confused about "kmers" tbh but great explanation
note that kmer #1 shouldn't be marked as a true positive so fast the locations might as well have been marked by N other preceding kmers, it's a probabilistic data structure so it's inconclusive as to whether or not it's a true or false positive