RobEdwards
RobEdwards
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ASM 2021 Phage and IBD
Dr. Rob Edwards from Flinders University discusses the expansion of phage that occurs during irritable bowel disease. We don't know why (yet) this happens.
Переглядів: 2 146

Відео

ABACBS Presentation 2020
Переглядів 1,8 тис.3 роки тому
Dr. Rob Edwards from Flinders University talks about his phage bioinformatics approaches at the 2020 Australian Bioinformatics and Computational Biology Virtual Conference
Why does paired end sequencing help assembly?
Переглядів 39 тис.5 років тому
Dr. Rob Edwards from San Diego State University wonders why paired-end sequencing helps with DNA sequence assembly.
illumina paired end sequencing
Переглядів 104 тис.5 років тому
Dr. Rob Edwards from San Diego State University describes how Illumina paired-end sequencing works.
Sanger sequencing
Переглядів 10 тис.5 років тому
Dr. Rob Edwards from San Diego State University describes Sanger sequencing - the original and the best!
Pacific Biosciences Sequencing
Переглядів 40 тис.5 років тому
Dr. Rob Edwards from San Diego State University describes Pacific Biosciences SMRT single-molecule long read sequencing.
Oxford Nanopore ONT Sequencing
Переглядів 37 тис.5 років тому
Dr. Rob Edwards from San Diego State University describes Oxford Nanopore MinION sequencing
454 pyrosequencing
Переглядів 26 тис.5 років тому
Dr. Rob Edwards from San Diego State University philosophizes on 454 DNA sequencing.
What does it mean to sequence a genome?
Переглядів 8 тис.5 років тому
Dr. Rob Edwards from San Diego State University wonders what it means to sequence a genome! For an overview of genome sequencing, see the course manual: linsalrob.github.io/ComputationalGenomicsManual/GenomeSequencingOverview/
Introduction to Illumina Sequencing
Переглядів 38 тис.5 років тому
Dr. Rob Edwards from San Diego State University introduces Illumina DNA sequencing. For an overview of genome sequencing, see the course manual: linsalrob.github.io/ComputationalGenomicsManual/GenomeSequencingOverview/
Ion Torrent Sequencing
Переглядів 11 тис.5 років тому
Dr. Rob Edwards from San Diego State University outlines Ion Torrent Sequencing. For an overview of genome sequencing, see the course manual: linsalrob.github.io/ComputationalGenomicsManual/GenomeSequencingOverview/
Genome Peek
Переглядів 9335 років тому
Dr. Rob Edwards from San Diego State University introduces Genome Peek, a quick way to look at contamination in genomes and to see the composition of metagenomes. Check out the paper at PeerJ: peerj.com/articles/1025/ and the website at edwards.sdsu.edu/GenomePeek/
Introduction to k-mers
Переглядів 22 тис.5 років тому
Dr. Rob Edwards from San Diego State University gives an introduction to nucleotide and amino acid k-mers
Introduction on counting k-mers
Переглядів 15 тис.5 років тому
Dr. Rob Edwards from San Diego State University provides an introduction on counting k-mers in DNA and protein sequences
Counting k-mers with Bloom filters
Переглядів 3 тис.5 років тому
Dr. Rob Edwards from San Diego State University describes how we can use the Bloom filter to efficiently weed out k-mers that appear only once.
k-mer algorithms: Compare and Swap
Переглядів 16 тис.5 років тому
k-mer algorithms: Compare and Swap
Bloom Filters
Переглядів 16 тис.5 років тому
Bloom Filters
Counting Quotient Filters
Переглядів 2,2 тис.5 років тому
Counting Quotient Filters
Count Min Sketch
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Count Min Sketch
CheckM for Genome Consistency
Переглядів 2,6 тис.5 років тому
CheckM for Genome Consistency
BLAST 7 scoring gaps
Переглядів 7 тис.5 років тому
BLAST 7 scoring gaps
BLAST 8 Probability
Переглядів 6 тис.5 років тому
BLAST 8 Probability
BLAST 9 E values
Переглядів 12 тис.5 років тому
BLAST 9 E values
BLAST 10 Algorithms
Переглядів 7 тис.5 років тому
BLAST 10 Algorithms
BLAST 11 PSWM
Переглядів 6 тис.5 років тому
BLAST 11 PSWM
Central Dogma
Переглядів 8 тис.5 років тому
Central Dogma
ESKAPE Pathogens
Переглядів 4,5 тис.5 років тому
ESKAPE Pathogens
Klebsiella Introduction
Переглядів 9 тис.5 років тому
Klebsiella Introduction
Metagenome Binning
Переглядів 8 тис.5 років тому
Metagenome Binning
Subsystems Introduction
Переглядів 8895 років тому
Subsystems Introduction

КОМЕНТАРІ

  • @AnibalEvangelista
    @AnibalEvangelista 2 дні тому

    Loved the part of blinking lights. Me gusto mucho xD

  • @RebelliousX82
    @RebelliousX82 2 дні тому

    No need for Putty in Windows, you can "Add / Remove Features" from Settings / Control Panel and add OpenSSH (11MB), then you can access all ssh commands from terminal.

  • @ulhoolho9188
    @ulhoolho9188 4 дні тому

    Thank you for another incredible video!😊❤

  • @ulhoolho9188
    @ulhoolho9188 4 дні тому

    Thank you, perl is so good, that help me so much! 😊

  • @satishmishra5886
    @satishmishra5886 4 дні тому

    Thanks for this video. It is really great.

  • @LilJollyJoker
    @LilJollyJoker 11 днів тому

    Nice Video!

  • @Sam-nb1rm
    @Sam-nb1rm 15 днів тому

    Still don't know why it's helpful. Thanks anyway

  • @YuliiaJV
    @YuliiaJV 18 днів тому

    Thank you! I am ADHDer trying to understand all this for my masters in data science and your videos most helpful. Subscribed

  • @Jund040
    @Jund040 25 днів тому

    2:48 isnt GGTTA the overlap of the sequence?

  • @Nillipilli
    @Nillipilli Місяць тому

    Great explanation

  • @Nillipilli
    @Nillipilli Місяць тому

    Very clear so far 👍🏻

  • @ecksem
    @ecksem Місяць тому

    How are a bunch of students of a somewhat difficult engineering major freaking out about a mirrored video in the comments

  • @user-id4nw4sq9f
    @user-id4nw4sq9f Місяць тому

    Thanks you sir😊

  • @lindseycox9204
    @lindseycox9204 Місяць тому

    thank youuuuuuuuuuuuuuuuuu

  • @andrewmelean8259
    @andrewmelean8259 Місяць тому

    Nice

  • @markuspotthast0123
    @markuspotthast0123 2 місяці тому

    My professor: *copies and pastes mathmatical proofs onto powerpoint slide* Dr. Edwards: *actually thinks about how to explain the subject-matter to others*

  • @erikmuller6272
    @erikmuller6272 2 місяці тому

    7:00 150bp from both end will have 100 bp overlap on 200bp . Like total length 12 bp has 6/6 no overlap ,but 12 shorten to 8bp will have 4 overlap of 6/6 both end read

  • @mathisventura3686
    @mathisventura3686 2 місяці тому

    I’m a little bit lost in my analysis: - I am expecting a 70bp amplicon at the end. - When I look at the size of my reads 1 and 2 before reassembling, I have 12 to 131 bp for R1, and 21 to 148 bp for R2. - How, with these highly distributed read lengths, am I supposed to choose the size for reassembling?

  • @abinayasivasamy4708
    @abinayasivasamy4708 2 місяці тому

    What's that you're writing on? Really great to learn

  • @annaportugal1657
    @annaportugal1657 2 місяці тому

    Im in love with you

  • @oussamabenney
    @oussamabenney 2 місяці тому

    arigato

  • @cristianh16
    @cristianh16 2 місяці тому

    Ok but, why? Why the size like a prime number? How does it guarantee less collisions? How it works compare with even size

  • @TeamRocketPokeMMO
    @TeamRocketPokeMMO 2 місяці тому

    Easy way to remember omega means slower algo is imagine the symbol is a long worm that has to slowly coil upwards to move- where as O is like sonic speeding in a ball

  • @tomaslipavsky7160
    @tomaslipavsky7160 2 місяці тому

    Čau dědo, miluju tvojí torbu <3

  • @sty1623
    @sty1623 3 місяці тому

    Its called quick sort but its not the quickest

  • @thebestisyettocome9317
    @thebestisyettocome9317 3 місяці тому

    you made this incredibly simple! thank you!!

  • @fhoughloftnposdu2641
    @fhoughloftnposdu2641 3 місяці тому

    Your hard work continues to pay off. Thank you for your generosity!

  • @JuicyIceFilms
    @JuicyIceFilms 3 місяці тому

    I am not exaggerating when I say that the THUMBNAIL of this video explained this concept more accurately than a 50-minute lecture from my university professor.

  • @bunnykek
    @bunnykek 3 місяці тому

    thanks

  • @omarabdelkader5214
    @omarabdelkader5214 4 місяці тому

    Thank u for ur great explanation, got it from the very first time

  • @deeksha6514
    @deeksha6514 4 місяці тому

    That means encryption done with public key can only be decrypted using equivalent private key.Right?

  • @kostiantynkarzhanov9216
    @kostiantynkarzhanov9216 4 місяці тому

    Thank you! Very well explained and easy to understand! 💛

  • @jaba4kush1
    @jaba4kush1 4 місяці тому

    Very informative lecture. Thanks

  • @ethan6708
    @ethan6708 4 місяці тому

    THIS IS WRONG

  • @uhrcru
    @uhrcru 4 місяці тому

    thats impressive you are writing with left hand towards left to make us see numbers on the glass from our side. Thats pretty cool & true skill !

  • @blue4107
    @blue4107 4 місяці тому

    I'm in a rush trying to prepare form my algorithm's exam in just 9 days and this explanation was just what I needed to understand HeapSort. Thank you so much!!

  • @stefano8936
    @stefano8936 4 місяці тому

    I got it! The real trick happens during blackouts

  • @user-iy9zc2jp8r
    @user-iy9zc2jp8r 4 місяці тому

    You can write letter reversely?! Awesome

  • @user-ym5vn8pm8i
    @user-ym5vn8pm8i 4 місяці тому

    SUPER HELPFUL!!! THANK YOU SO MUCH

  • @engalipak
    @engalipak 4 місяці тому

    Wonderful explaination. Pls answer this query if possible related to this topic.. We download the 'private key' over the internet from AWS. Dsnt it makes the private key insecure as it was not on our laptop in the 1st place !!?? And got downloaded from AWS externally.

  • @marinavictoria7591
    @marinavictoria7591 4 місяці тому

    I study Biotechnology in Universidad de Salamanca, and this was very useful, thank you so much.

  • @Ioden
    @Ioden 4 місяці тому

    I actually had a good CS 101 professor -- don't want to trash talk him in absentia -- but this is still easier to understand than the way he explained classes and inheritance. Thank you!

  • @w410921
    @w410921 4 місяці тому

    Great Video, brilliant explanation.Thank you

  • @arundhatibandopadhyaya1463
    @arundhatibandopadhyaya1463 5 місяців тому

    I love your videos professor. Hope I can attend your class in person someday :)

  • @robinsir
    @robinsir 5 місяців тому

    char's corresponding object version is Character, and float's object version is Float.

  • @mahmutaydn4378
    @mahmutaydn4378 5 місяців тому

    thank you so much for this valuable video

  • @alminaduzen7370
    @alminaduzen7370 5 місяців тому

    Could you please explain why it has a score of L-L = 4?

  • @user-ps5cl6lg4m
    @user-ps5cl6lg4m 5 місяців тому

    great class sir life saver

  • @johnxina7496
    @johnxina7496 5 місяців тому

    to check the balance dont you have to check the heights of the subtrees? this guy is checking the height of the root node itself...

  • @VeejayRampay
    @VeejayRampay 5 місяців тому

    really confused about "kmers" tbh but great explanation

    • @VeejayRampay
      @VeejayRampay 5 місяців тому

      note that kmer #1 shouldn't be marked as a true positive so fast the locations might as well have been marked by N other preceding kmers, it's a probabilistic data structure so it's inconclusive as to whether or not it's a true or false positive